Molecular biologist · Diagnostics innovator

Giulia
Kennedy, PhD

Co-founder and Chief Scientific Officer, PinkDx

Giulia C. Kennedy is a molecular biologist and diagnostics innovator with deep expertise in genomics, bioinformatics and translational research. She is co-founder and Chief Scientific Officer of PinkDx, a women's health company developing less invasive diagnostics for gynecologic cancers.

A career read as a genome.

Enter the genomescroll · 14 chapters · 1990s – 2024
Giulia Kennedy, smiling, in a bright pink blouse against a light background
Skip to the career genome

The career genome

Two strands.
One career.

Strand A carries the organisations: the universities, the companies, the boards. Strand B carries the science: research programmes, landmark papers, patents, the tests that reached patients. The rungs are where they meet.

  • Achievement
  • Board / advisor
  • Company
  • Founder
  • Institution
  • Publication
  • Research
Scroll to travel

The career genome: 14 chapters

  1. UCSFStrand A · Institution
    Chapter 01 · Institution

    Education and training

    1992 – 1995

    B.S. Applied Science; Ph.D. Biochemistry; postdoctoral training in biochemistry

    A B.S. in Applied Science from Youngstown State, a Ph.D. in Biochemistry from Case Western Reserve, and postdoctoral training at UCSF, where her earliest papers traced how the insulin gene is switched on (1980s–early 1990s).

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  2. MillenniumStrand A · Company
    Chapter 02 · Company

    Millennium Pharmaceuticals

    1999 – 1999

    Scientist, diabetes susceptibility genes

    A scientist at Millennium Pharmaceuticals in the 1990s, applying genomic and genetic approaches to uncover diabetes susceptibility genes. Dates within the decade are not sourced.

    Learn more
  3. ChironStrand A · Company
    Chapter 03 · Company

    Chiron Corporation

    1999 – 1999

    Scientific leader, colon and breast cancer gene discovery

    Scientific leader for Chiron's colon and breast cancer gene discovery efforts, which identified oncology markers for therapeutic drug development; named inventor on Chiron patent filings on colon-cancer polynucleotides.

    Learn more
  4. AffymetrixStrand A · Company
    Chapter 04 · Company

    Affymetrix

    JAN 2000 – MAR 2008

    Senior Director; led the Genomics Collaborations and Genotyping Technology R&D groups

    Eight years as Senior Director at Affymetrix (January 2000 – March 2008), leading the Genomics Collaborations and Genotyping Technology R&D groups behind the GeneChip Mapping arrays.

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  5. AffymetrixStrand B · Research
    Chapter 05 · Research

    Whole-genome genotyping

    2003 – 2005

    First author and co-author of the GeneChip Mapping array methods papers

    The methods papers behind array-based SNP genotyping: Nature Biotechnology 2003, Genome Research and Nature Methods 2004, and the Bioinformatics genotype-calling algorithms of 2003 and 2005.

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  6. VeracyteStrand A · Company
    Chapter 06 · Company

    Veracyte

    APR 2008 – DEC 2022

    Chief Scientific Officer; Chief Medical Officer from 2018; Global Chief Scientific Officer and Chief Medical Officer from 2022

    Bonnie Anderson's first executive hire at Veracyte in 2008. As Chief Scientific Officer, then Chief Medical Officer, she led the science behind Afirma, Percepta and Envisia over fourteen years.

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  7. VeracyteStrand B · Achievement
    Chapter 07 · Achievement

    Afirma

    JAN 2011 – JAN 2018

    Chief Scientific Officer, Veracyte

    Veracyte's first product: a gene expression classifier that tells benign thyroid nodules from suspicious ones when cytology cannot. Launched January 2011, validated in the NEJM in 2012, 100,000 tests by 2018.

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  8. VeracyteStrand B · Achievement
    Chapter 08 · Achievement

    Veracyte goes public

    OCT 2013 – NOV 2013

    Chief Scientific Officer, Veracyte

    Veracyte priced its initial public offering on October 30, 2013 at $13.00 a share and began trading on NASDAQ as VCYT, five years after Kennedy joined as its first executive hire.

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  9. VeracyteStrand B · Research
    Chapter 09 · Research

    Percepta and Envisia

    APR 2015 – APR 2024

    Chief Scientific Officer and Chief Medical Officer, Veracyte

    Genomic classifiers for the lung: Percepta for suspicious nodules after an inconclusive bronchoscopy (2015), Envisia for idiopathic pulmonary fibrosis without surgical biopsy (2016), and a nasal swab test for lung cancer risk.

    Learn more
  10. VeracyteStrand B · Publication
    Chapter 10 · Publication

    Afirma GSC and the Xpression Atlas

    MAY 2017 – SEP 2022

    Chief Scientific Officer and Chief Medical Officer, Veracyte

    The second-generation Afirma: RNA sequencing and ensemble machine learning, validated in JAMA Surgery in 2018, finding at least a third more benign nodules than the original test, with the Xpression Atlas reading variants and fusions from the same sample.

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  11. VeracyteStrand B · Achievement
    Chapter 11 · Achievement

    A patent family

    OCT 2019 – MAY 2025

    Co-inventor

    Co-inventor on more than 20 patents. The Veracyte family runs from a 2009 priority date on molecular profiling of thyroid nodules to grants in 2024 and 2025, with separate lines on sample classification and detecting usual interstitial pneumonia.

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  12. AcuamarkStrand A · Board / advisor
    Chapter 12 · Board / advisor

    Acuamark Diagnostics

    APR 2023 – PRESENT

    Member, Board of Directors

    Four months after leaving Veracyte, Kennedy joined the board of Acuamark Diagnostics, a company developing high-throughput qPCR technology for blood-based early detection of cancer.

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  13. PinkDxStrand A · Founder
    Chapter 13 · Founder

    PinkDx

    APR 2024 – PRESENT

    Co-founder and Chief Scientific Officer

    Co-founded with Bonnie Anderson, PinkDx launched on April 25, 2024 with a $40 million Series A, upsized to $45 million in 2025, to build less invasive diagnostics for gynecologic cancers from Daly City, California.

    Learn more
  14. PinkDxStrand B · Research
    Chapter 14 · Research

    Reading endometrial cancer from a vaginal swab

    JUL 2024 – PRESENT

    Co-founder and Chief Scientific Officer, PinkDx

    The PNK001 study showed that molecular signals of endometrial cancer can be read from a vaginal swab by whole-transcriptome sequencing and machine learning, published in April 2026; the PROACTION study is validating the test.

    Learn more
Metamorphosis

The genome
lets go

DNA life growth bloom. Every nucleotide of the career leaves the strand and falls toward the ground as a petal.

About

Giulia C. Kennedy, PhD

CO-FOUNDER AND CHIEF SCIENTIFIC OFFICER, PINKDX

Giulia C. Kennedy is a molecular biologist and diagnostics innovator with deep expertise in genomics, bioinformatics and translational research. She is co-founder and Chief Scientific Officer of PinkDx, a women's health company developing less invasive diagnostics for gynecologic cancers.

She joined Veracyte in April 2008 as Senior Vice President of Research and Development, became Chief Scientific Officer in September 2008, added the role of Chief Medical Officer in 2018, was named Global Chief Scientific Officer and Chief Medical Officer in January 2022, and departed at the end of 2022.

Read the full profile
Research constellation6 research areas around Giulia C. Kennedy: Gene regulation and gene discovery (UCSF, Millennium, Chiron, Diabetes 1995, Nature Genetics 1995, Proceedings of the National Academy of Sciences of the United States of America 1992); Whole-genome genotyping platforms (Affymetrix, Affymetrix GeneChip Mapping arrays, Whole-genome sampling analysis (one-primer genotyping assay), Bioinformatics 2005, Genome Research 2004, Bioinformatics 2003, Nature Biotechnology 2003); Thyroid nodule genomic classification (Veracyte, Afirma Gene Expression Classifier, Afirma Genomic Sequencing Classifier, Whole-transcriptome RNA sequencing, Ensemble machine learning classifiers, Thyroid 2022, The Journal of Clinical Endocrinology & Metabolism 2021, Frontiers in Endocrinology 2019, Frontiers in Endocrinology 2019, BMC Systems Biology 2019, JAMA Surgery 2018, BMC Bioinformatics 2016, The Journal of Clinical Endocrinology & Metabolism 2012, New England Journal of Medicine 2012, The Journal of Clinical Endocrinology & Metabolism 2010); Machine learning for clinical diagnostics (Veracyte, PinkDx, Ensemble machine learning classifiers, Whole-transcriptome RNA sequencing, International Journal of Gynecological Cancer 2026, Chest 2024, BMC Medical Genomics 2020, BMC Systems Biology 2019, BMC Genomics 2018, JAMA Surgery 2018, Annals of the American Thoracic Society 2017, The Lancet Respiratory Medicine 2015, The Journal of Clinical Endocrinology & Metabolism 2010); Pulmonary genomic classifiers (Veracyte, Percepta Bronchial Genomic Classifier, Envisia Genomic Classifier, Whole-transcriptome RNA sequencing, Ensemble machine learning classifiers, Chest 2024, American Journal of Respiratory and Critical Care Medicine 2021, BMC Medical Genomics 2020, The Lancet Respiratory Medicine 2019, BMC Genomics 2018, Annals of the American Thoracic Society 2017, BMC Cancer 2016, The Lancet Respiratory Medicine 2015); Gynecologic cancer detection (PinkDx, PinkDx vaginal swab classifier for endometrial cancer, Whole-transcriptome RNA sequencing, Ensemble machine learning classifiers, International Journal of Gynecological Cancer 2026).UCSFMillenniumChironDiabetes 1995Nature Genetics 1995PNASUSA 1992AffymetrixAffymetrix GeneChip Mappi…Whole-genome sampling ana…Bioinformatics 2005Genome Research 2004Bioinformatics 2003Nature Biotechnology 2003VeracyteAfirma Gene Expression Cl…Afirma Genomic Sequencing…Whole-transcriptome RNA s…Ensemble machine learning…Thyroid 2022JCEM 2021Frontiers in Endocrinology 2019Frontiers in Endocrinology 2019BMC Systems Biology 2019JAMA Surgery 2018BMC Bioinformatics 2016JCEM 2012New England Journal of Medicine 2012JCEM 2010PinkDxIJGC 2026Chest 2024BMC Medical Genomics 2020BMC Genomics 2018AATS 2017Lancet Respiratory Medicine 2015Percepta Bronchial Genomi…Envisia Genomic ClassifierAJRCCM 2021Lancet Respiratory Medicine 2019BMC Cancer 2016PinkDx vaginal swab class…Gene regulation and gene discovery1992 – 1999Whole-genome genotyping platformsJan 2000 – Mar 2008Thyroid nodule genomic classificationApr 2008 – Dec 2022Machine learning for clinical diagnosticsDec 2010 – presentPulmonary genomic classifiersApr 2015 – Apr 2024Gynecologic cancer detection2022 – present
Publications

Selected peer-reviewed work

5 of 26 indexed articles, chosen for their place in the career genome. Every entry links to its journal record.

  1. 2026

    Whole-transcriptome sequencing and machine learning detect molecular signatures of endometrial cancer in non-invasive vaginal swabs

    Jason D. Wright, Daniel G. Pankratz, Guoying Liu, Shuyang Wu, Devon S. Payne, Patrick M. Pattee, Mei G. Wong, Manqiu Cao, Aubrianne K. Milton, Federico A. Monzon, Mark R. Hopkins, Giulia C. Kennedy, Pedro T. Ramirez, Andrea Mariani

    Gynecologic cancer detectionMachine learning for clinical diagnostics
    International Journal of Gynecological Cancervol. 36 · no. 4 · pp. 104546DOI 10.1016/j.ijgc.2026.104546PMID 41945089↗ Journal record
  2. 2019

    Use of a molecular classifier to identify usual interstitial pneumonia in conventional transbronchial lung biopsy samples: a prospective validation study

    Ganesh Raghu, Kevin R Flaherty, David J Lederer, David A Lynch, Thomas V Colby, Jeffrey L Myers, Steve D Groshong, Brandon T Larsen, Jonathan H Chung, Mark P Steele, Sadia Benzaquen, Karel Calero, Amy H Case, Gerard J Criner, Steven D Nathan, Navdeep S Rai, Murali Ramaswamy, Lars Hagmeyer, J Russell Davis, Umair A Gauhar, Daniel G Pankratz, Yoonha Choi, Jing Huang, P Sean Walsh, Hannah Neville, Lori R Lofaro, Neil M Barth, Giulia C Kennedy, Kevin K Brown, Fernando J Martinez

    Pulmonary genomic classifiers
    The Lancet Respiratory Medicinevol. 7 · no. 6 · pp. 487-496DOI 10.1016/S2213-2600(19)30059-1↗ Journal record
  3. 2018

    Performance of a Genomic Sequencing Classifier for the Preoperative Diagnosis of Cytologically Indeterminate Thyroid Nodules

    Kepal N. Patel, Trevor E. Angell, Joshua Babiarz, Neil M. Barth, Thomas Blevins, Quan-Yang Duh, Ronald A. Ghossein, R. Mack Harrell, Jing Huang, Giulia C. Kennedy, Su Yeon Kim, Richard T. Kloos, Virginia A. LiVolsi, Gregory W. Randolph, Peter M. Sadow, Michael H. Shanik, Julie A. Sosa, S. Thomas Traweek, P. Sean Walsh, Duncan Whitney, Michael W. Yeh, Paul W. Ladenson

    Thyroid nodule genomic classificationMachine learning for clinical diagnostics
    JAMA Surgeryvol. 153 · no. 9 · pp. 817-824DOI 10.1001/jamasurg.2018.1153↗ Journal record
  4. 2012

    Preoperative Diagnosis of Benign Thyroid Nodules with Indeterminate Cytology

    Erik K. Alexander, Giulia C. Kennedy, Zubair W. Baloch, Edmund S. Cibas, Darya Chudova, James Diggans, Lyssa Friedman, Richard T. Kloos, Virginia A. LiVolsi, Susan J. Mandel, Stephen S. Raab, Juan Rosai, David L. Steward, P. Sean Walsh, Jonathan I. Wilde, Martha A. Zeiger, Richard B. Lanman, Bryan R. Haugen

    Thyroid nodule genomic classification
    New England Journal of Medicinevol. 367 · no. 8 · pp. 705-715DOI 10.1056/NEJMoa1203208PMID 22731672↗ Journal record
  5. 2003
    Nature Biotechnologyvol. 21 · pp. 1233-1237↗ Journal record

All publications

Impact

What the record shows

33 sourced accomplishments across 3 dimensions. Each one cites its source on the chapter it belongs to.

Scientific

Methods, discoveries and the record that documents them.

  • 2011 · AFIRMA

    Led the research and development organisation that built and validated the Afirma Gene Expression Classifier, the first of three commercialized tests credited to her at Veracyte.

    Chapter: Afirma
  • 2011 · AFIRMA

    Second author of the 2012 NEJM validation study of the classifier.

    Chapter: Afirma
  • 2015 · PERCEPTA AND ENVISIA

    Credited by Veracyte with overseeing the development of Percepta and Envisia, its second and third commercialized genomic tests.

    Chapter: Percepta and Envisia
  • 2015 · PERCEPTA AND ENVISIA

    An author of the Envisia validation studies published in The Lancet Respiratory Medicine (2019) and the American Journal of Respiratory and Critical Care Medicine (2021).

    Chapter: Percepta and Envisia
  • 2017 · AFIRMA GSC AND THE XPRESSION ATLAS

    Co-author of the JAMA Surgery 2018 validation of the Afirma GSC and last author of the BMC Systems Biology 2019 paper on identifying Hürthle cell cancers with a trio of machine learning algorithms.

    Chapter: Afirma GSC and the Xpression Atlas
  • 2017 · AFIRMA GSC AND THE XPRESSION ATLAS

    Described the ensemble machine learning behind the GSC as deriving "from years of thoughtful scientific research, data analysis and statistical modeling".

    Chapter: Afirma GSC and the Xpression Atlas
  • 2019 · A PATENT FAMILY

    Co-inventor, with Bonnie H. Anderson, Darya I. Chudova, Eric T. Wang, Hui Wang, Moraima Pagan, Nusrat Rabbee and Jonathan I. Wilde, on the thyroid molecular-profiling patent family that underlies Afirma.

    Chapter: A patent family
  • 2024 · READING ENDOMETRIAL CANCER FROM A VAGINAL SWAB

    Co-author of the first peer-reviewed evidence that endometrial cancer signals can be detected from a non-invasive vaginal swab (International Journal of Gynecological Cancer, 2026).

    Chapter: Reading endometrial cancer from a vaginal swab
  • 31 JAN 2001 · PATENT

    Chiron colon-cancer polynucleotide patent filed

    Chapter: patent
  • 27 NOV 2007 · PATENT

    US 7,300,788 granted: Method for genotyping polymorphisms in humans

    Chapter: patent
  • 17 NOV 2009 · PATENT

    US 8,541,170: Methods and compositions of molecular profiling for disease diagnostics

    Chapter: patent
  • 11 MAR 2014 · PATENT

    US 8,669,057: Methods and compositions for diagnosis of thyroid conditions

    Chapter: patent
  • 15 OCT 2019 · PATENT

    US 10,446,272: Methods and compositions for classification of samples

    Chapter: patent
  • 2 MAY 2023 · PATENT

    US 11,639,527: Methods for nucleic acid sequencing

    Chapter: patent
  • 7 MAY 2024 · PATENT

    US 11,976,329: Methods and systems for detecting usual interstitial pneumonia

    Chapter: patent
  • 8 OCT 2024 · PATENT

    US 12,110,554: Methods for classification of tissue samples as positive or negative for cancer

    Chapter: patent
  • 13 MAY 2025 · PATENT

    US 12,297,503: molecular profiles associated with thyroid cancer

    Chapter: patent
  • 20 MAY 2025 · PATENT

    US 12,305,238: Methods for treatment of thyroid cancer

    Chapter: patent

Clinical

Tests built, validated and used in patient care.

  • 1999 · CHIRON CORPORATION

    Led colon and breast cancer gene discovery efforts whose output included oncology markers for therapeutic drug development.

    Chapter: Chiron Corporation
  • 2000 · AFFYMETRIX

    Led the R&D groups whose whole-genome sampling assay and GeneChip Mapping 10K and 100K arrays were described in Nature Biotechnology (2003), Genome Research (2004) and Nature Methods (2004).

    Chapter: Affymetrix
  • 2000 · AFFYMETRIX

    Co-inventor on Affymetrix genotyping patents, including US 7,300,788 and US 8,679,758.

    Chapter: Affymetrix
  • 2008 · VERACYTE

    Oversaw the development of three commercialized genomic tests (Afirma, Percepta, Envisia) that help reduce unnecessary surgeries by resolving diagnostic uncertainty.

    Chapter: Veracyte
  • 2008 · VERACYTE

    By 2026 her biography credited her with leading the development and commercialization of eight genomic diagnostic tests at Veracyte.

    Chapter: Veracyte
  • 2008 · VERACYTE

    Veracyte's 2023 proxy statement described her as instrumental in developing the company's innovative products.

    Chapter: Veracyte
  • JAN 2011 · MILESTONE

    Commercial launch of Afirma

    Chapter: milestone
  • 30 OCT 2013 · MILESTONE

    Veracyte initial public offering

    Chapter: milestone
  • 25 JAN 2018 · MILESTONE

    100,000th Afirma genomic test

    Chapter: milestone
  • 4 MAR 2019 · REGULATORY

    Medicare coverage for the Envisia Genomic Classifier

    Chapter: regulatory

Entrepreneurial

Companies founded, built and advised.

  • 2024 · PINKDX

    Co-founded a women's health diagnostics company whose first programme, a vaginal swab test for endometrial cancer, reached peer-reviewed publication in 2026.

    Chapter: PinkDx
  • 26 APR 2023 · APPOINTMENT

    Appointed to the board of Acuamark Diagnostics

    Chapter: appointment
  • 25 APR 2024 · FUNDING

    PinkDx $40 million Series A

    Chapter: funding
  • 23 JAN 2025 · FUNDING

    PinkDx Series A upsized to $45 million

    Chapter: funding
  • 2 MAR 2026 · APPOINTMENT

    Joined the Scientific Advisory Board of Wisdom Bioscience

    Chapter: appointment

The ability to use genomic testing – such as the Percepta GSC – to determine which patients need intervention and those who may be safely monitored with routine imaging can help improve patient outcomes.